PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6366s0014.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 336aa    MW: 38008.6 Da    PI: 6.4398
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6366s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.7e-061142334
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                          r C+ +++  +  +C+ ++  lC  C  + H
  Araha.6366s0014.1.p 11 HRLCDYCDSSVALVYCKADSAKLCLACDKQVH 42
                         578**************************999 PP
2zf-B_box21.54.7e-075696541
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                          C+ +++ + +lfCe+ ++ lC++C  ++H      H+++p
  Araha.6366s0014.1.p 56 LCDSCHDSPSSLFCETERSVLCQNCDWQHHTAssslHSRRP 96
                         7***************************7744778887765 PP
3CCT60.36.6e-21290333144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a
  Araha.6366s0014.1.p 290 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 333
                          899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.0E-13956IPR000315B-box-type zinc finger
PROSITE profilePS5011910.381956IPR000315B-box-type zinc finger
CDDcd000219.37E-61256No hitNo description
PROSITE profilePS5011910.0965297IPR000315B-box-type zinc finger
CDDcd000212.60E-85696No hitNo description
SMARTSM003360.45797IPR000315B-box-type zinc finger
PROSITE profilePS5101714.743290332IPR010402CCT domain
PfamPF062038.2E-15290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEEEEGHQQR HRLCDYCDSS VALVYCKADS AKLCLACDKQ VHVTNQLFAK HFRSLLCDSC  60
HDSPSSLFCE TERSVLCQNC DWQHHTASSS LHSRRPFEGF TGCPSVPELL AIVGLDDLTL  120
DSGLLWESPE IFSLNDLVVS GGSGTHNFRA TDVPPLPKNR HATCGKYKAE MIRQLRGLAR  180
SERSCLKFET PEAEMDAGFQ FLAPDLFSTS ELESGLKWFD QQDHEDFPYC SLLKNSSQQS  240
DEKPENVDRE SSSVMVPVSD GLNRCEEEIV MVPVCTSTRS TTHEINSLER NSALSRYKEK  300
KKSRRYEKHI RYESRKVRAE SRTRIRGRFA KAADP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6366s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0234130.0BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874876.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_020884406.10.0zinc finger protein CONSTANS-LIKE 13
SwissprotO822560.0COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLD7LHD30.0D7LHD3_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.4__3038__AT2G47890.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]