PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6556s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 314aa    MW: 35607.9 Da    PI: 6.2243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6556s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd++l ++++++G  +W++ ++  g++R++k+c++rw +yl
  Araha.6556s0009.1.p 14 KGPWLPEEDDKLTNYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding54.92.1e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
  Araha.6556s0009.1.p  67 RGKFSAEEEETILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.366961IPR017930Myb domain
SuperFamilySSF466891.76E-2911108IPR009057Homeodomain-like
SMARTSM007172.6E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-241568IPR009057Homeodomain-like
CDDcd001674.31E-101661No hitNo description
PROSITE profilePS5129426.98762116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2869117IPR009057Homeodomain-like
CDDcd001673.66E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRSPSSDET GLKKGPWLPE EDDKLTNYIH KHGHSSWSAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SAEEEETILN LHAVLGNKWS MIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DDIFSSLSQL MSLSNLRGLV DLQQQFPIED QARMNLQTEM AKLQLFHYLL  180
QSPPPPPMSS SNINPNDLNI LNLLIKENSN TNTLDLGFLT SHLQDFNNNL PSLKTLEENH  240
FSQNTSPIWL HEPPSLNQTM LPTHDPCAQS VDGFSGNQAS SSHDQEVAVT DSVDWPDHHL  300
FDDSMFPDFS YQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6556s0009.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196460.0AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871777.10.0transcription factor MYB8
RefseqXP_020871778.10.0transcription factor MYB8
RefseqXP_020871779.10.0transcription factor MYB8
RefseqXP_020871781.10.0transcription factor MYB8
RefseqXP_020871782.10.0transcription factor MYB8
RefseqXP_020871783.10.0transcription factor MYB8
RefseqXP_020871784.10.0transcription factor MYB8
RefseqXP_020871785.10.0transcription factor MYB8
RefseqXP_020871786.10.0transcription factor MYB8
RefseqXP_020871787.10.0transcription factor MYB8
RefseqXP_020871788.10.0transcription factor MYB8
RefseqXP_020871789.10.0transcription factor MYB8
RefseqXP_020871790.10.0transcription factor MYB8
SwissprotQ9FJP20.0MYB53_ARATH; Transcription factor MYB53
TrEMBLD7MT960.0D7MT96_ARALL; AtMYB53
STRINGfgenesh2_kg.8__2570__AT5G65230.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.10.0myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]