PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6656s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 365aa    MW: 42356.9 Da    PI: 4.9832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6656s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.3e-161151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         +en+  r +++ kRr g+lKK +ELS+LCd+++++iifs++
  Araha.6656s0002.1.p 11 VENDNARAISLRKRRVGLLKKVKELSILCDVNACMIIFSPN 51
                         79*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.614151IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-24160IPR002100Transcription factor, MADS-box
CDDcd002662.82E-28285No hitNo description
SuperFamilySSF554551.83E-21293IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTRKKVKLEW VENDNARAIS LRKRRVGLLK KVKELSILCD VNACMIIFSP NEVEPVVWPS  60
VETARDLLDD FFALPRYEHI KKEMDVELYL NEKKNKVNEE LIKSCQKNKE YVTNELMMQL  120
QCGRIIDDLN LSEIYTLLSF SRDTIISLRK KLDFMQFSPL RDLPVLPFEA QVEQFMITTN  180
DAFLGGNQDD ERAGNTDETT RIINIDSLRE NKSYYLIDQW FPTPEPPKHV IDQQIRYGNP  240
NPRGYYPYQE SSSNGNPNLE MMSVCPQVMT FHDLVGSTTQ PLQHENMNNN SIMAMNQPRQ  300
LYPFDFMSHE LGIQEEGSNI SNSQFYRSNN TTKTNDRLFQ EPPPNETTAR KSNIDATSFD  360
INRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLEWVENDNARAISLRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6656s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0051680.0AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885147.11e-164uncharacterized protein LOC110229407
TrEMBLA0A178VQF21e-146A0A178VQF2_ARATH; AGL48
TrEMBLQ9XEF11e-146Q9XEF1_ARATH; AGAMOUS-like 48
TrEMBLV4NQI01e-146V4NQI0_EUTSA; Uncharacterized protein
STRINGBostr.27991s0056.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-132AGAMOUS-like 48