PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.67097s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 75aa    MW: 8480.64 Da    PI: 9.6344
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.67097s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.33.5e-322474151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey++
  Araha.67097s0001.1.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAN 74
                          79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2491675IPR002100Transcription factor, MADS-box
CDDcd002652.66E-381775No hitNo description
SuperFamilySSF554551.15E-291774IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003192.5E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-335374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MEEGGSSHDG ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VIFSTRGRLY EYANN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-211675160Myocyte-specific enhancer factor 2B
1tqe_Q2e-211675160Myocyte-specific enhancer factor 2B
1tqe_R2e-211675160Myocyte-specific enhancer factor 2B
1tqe_S2e-211675160Myocyte-specific enhancer factor 2B
6c9l_A2e-211675160Myocyte-specific enhancer factor 2B
6c9l_B2e-211675160Myocyte-specific enhancer factor 2B
6c9l_C2e-211675160Myocyte-specific enhancer factor 2B
6c9l_D2e-211675160Myocyte-specific enhancer factor 2B
6c9l_E2e-211675160Myocyte-specific enhancer factor 2B
6c9l_F2e-211675160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.67097s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7276451e-120AY727645.1 Arabidopsis lyrata subsp. petraea SHATTERPROOF1 (SHP1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876479.11e-47agamous-like MADS-box protein AGL1 isoform X2
RefseqXP_020880598.11e-47agamous-like MADS-box protein AGL1 isoform X1
SwissprotP293811e-47AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLD7LW763e-46D7LW76_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2325__AT3G58780.14e-47(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.24e-30MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]