PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6719s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 407aa    MW: 44496.6 Da    PI: 6.6258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6719s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.1e-062913291154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  Araha.6719s0001.1.p 291 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 329
                          5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-11290343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-6290333No hitNo description
Gene3DG3DSA:4.10.280.107.3E-9290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MADEFRATAA ICGGGGGAWW NSPRSVMSPS DHFLSPCFGA SITSDDFTSQ ENNLKARVTS  60
TDNNNNNNNN NNNNNIVFGQ READSDSGGS TVTMDSTLQM MGLGFSSNSS SDWSQTILQE  120
DLNSSFIRSS QDQDHGQGFL STTTSPYILN PACSSSPSTS SSSSLLRTFY EPEPSPYNFV  180
STTSCSINDP QLSWANKTNP HHQAAYGLIN NFSNNTNSRP FWSSSSTTNL NNTTPNNFVT  240
TPQIISTRLE DKTKNLKTRA QSESLKRAKD NETAAKKPRV TTPSPLPTFK VRKENLRDQI  300
TSLQQLVSPF GKTDTASVLQ EAIEYIKFLH DQVTVLSTPY MKQGASSKQQ QQQQQISGKS  360
KNQDGNENHE LRGHGLCLVP ISSTFPVANE TTADFWTPTF GGNNFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6719s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806490.0AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBankAY0856020.0AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence.
GenBankAY1130720.0AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322872.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqNP_564782.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A178WKI70.0A0A178WKI7_ARATH; Uncharacterized protein
STRINGAT1G61660.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]