PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.68467s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 137aa    MW: 16058.8 Da    PI: 10.5011
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.68467s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind63.84.3e-20594298
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
          HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
                          F kk+y++++d++l+++isws+++nsf+v++ e ++++vLpk  +  +++  F+  L+ YgFk++k + +        weF h++F +g+ 
  Araha.68467s0001.1.p  5 FYKKIYNVVDDPSLDQIISWSKSNNSFIVWNLEGLEREVLPKSIEFgKHYLKFMTELKFYGFKRIKGSAQ--------WEFGHEYFVRGQP 87
                          99****************************************7664256889*************99884........************* PP

                          XXXXXXX CS
          HSF_DNA-bind 92 ellekik 98
                          ell k+ 
  Araha.68467s0001.1.p 88 ELLVKMM 94
                          9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-20196IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-23391IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.17E-20393IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-20593IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-7528IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-75769IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MLSSFYKKIY NVVDDPSLDQ IISWSKSNNS FIVWNLEGLE REVLPKSIEF GKHYLKFMTE  60
LKFYGFKRIK GSAQWEFGHE YFVRGQPELL VKMMFKTGMK RIEELAAIRR AKKKKAKAAK  120
AKAEAEVENR FQQLRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.68467s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889898.15e-72heat stress transcription factor A-4a-like
RefseqXP_020889899.15e-72heat stress transcription factor A-4a-like
TrEMBLD7LZP81e-79D7LZP8_ARALL; Uncharacterized protein
STRINGscaffold_600621.12e-80(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.11e-27Winged helix-turn-helix transcription repressor DNA-binding