PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.69862s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 252aa MW: 29644.5 Da PI: 8.1562

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.69862s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55	1e-17	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+s+ Araha.69862s0001.1.p 11 IPNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPY 51 889************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.437	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.1E-25	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.02E-25	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.13E-23	2	85	No hit	No description
PRINTS	PR00404	2.4E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-17	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-9	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MTRKKVKLAY IPNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTSPEVWPS 60 NSGVQRVVSE FRTLPEMDQQ KKMVDQESFL KQRIAKATEN LRRQRKDNRE LEMSEVMFQC 120 LIGNMEMFHL NIVDLNDLGY MIEQYLKDVG SSSSAAVANF FNPIEHQQFR HPAVQHVGLN 180 EQPWNLNLNL NQNHNQNQQQ WFMEMMNHPE QMRYPTEQMG FQFMDDNHQN HIHHQQQEHQ 240 HHTPSESFNR S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAYIPNDSSRKATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.69862s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB830692	0.0	AB830692.1 Arabidopsis halleri subsp. halleri AGL80 gene for agamous-like MADS-box protein AGL80, partial cds, isolate: e060.
GenBank	AB830693	0.0	AB830693.1 Arabidopsis halleri subsp. tatrica AGL80 gene for agamous-like MADS-box protein AGL80, partial cds, isolate: e061.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871231.1	1e-141	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-123	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	S6AXX5	1e-144	S6AXX5_ARAHH; Agamous-like MADS-box protein AGL80 (Fragment)
TrEMBL	S6BCG9	1e-144	S6BCG9_ARAHA; Agamous-like MADS-box protein AGL80 (Fragment)
STRING	AT5G48670.1	1e-122	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-114	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Araha.69862s0001.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]