PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.7037s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 83aa MW: 9113.34 Da PI: 5.5811

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.7037s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	71.5	1.8e-22	1	66	36	101
DUF260 36 lFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++Ga nv+k+l++lp+++r +a++sl++eA++r++dPvyG+vg+i+ lq q++q++++la++++e+ Araha.7037s0004.1.p 1 IYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHFLQTQIQQTQNQLAKTQAEI 66 79***********************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.2E-20	1	63	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	13.036	1	66	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
IYGAGNVSKM LQQLPDQTRA EAVESLCFEA KCRVDDPVYG CVGIIHFLQT QIQQTQNQLA 60 KTQAEIALAQ TKLSQTHNSD FM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	1	66	46	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	1	66	46	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.7037s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473847	1e-113	AB473847.1 Arabidopsis thaliana ASL14 mRNA for ASYMMETRIC LEAVES2-like 14 protein, complete cds.
GenBank	DQ056609	1e-113	DQ056609.1 Arabidopsis thaliana putative LOB domain protein (At3g26620) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_189300.1	1e-50	LOB domain-containing protein 24
Swissprot	P59468	1e-51	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	R0FT52	7e-46	R0FT52_9BRAS; Uncharacterized protein
STRING	AT3G26660.1	5e-50	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	9e-43	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Araha.7037s0004.1.p