PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7109s0015.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 528aa    MW: 59867.4 Da    PI: 6.6153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7109s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.5e-063513841755
                          HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          N++f+ Lr+++P+ +       ++K +iL  +++Y+++L+
  Araha.7109s0015.1.p 351 NEKFSVLRTMVPTvN------EVDKESILNNTIKYLQELE 384
                          9************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5023220IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.064334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-7340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-4348388No hitNo description
SuperFamilySSF474593.01E-8349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-8351394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MSLTMADGVE AAGGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN  60
GDMKKRKKSY ESHYKDGLQR SKQLRKLYLS MLEGDNGTTT VSTTHDDHND DDDDDNCRHS  120
TRMMLSPDDL SDEEWYYLVS MSYVFSPSQC LPGRASATGE TIWLCNAQYA ENKLFSRSLL  180
ARSASIQTVV CFPYLGGVIE LGVTELISED HSLLQHVKSC LLEISAHQDN DDEKKMGIKI  240
IEEKHQTPLG ISDEDLHYKR TISTVLNYAA DRSSKNIHHR QPSTVSSDSG SSFLRWKQCE  300
RPDSGFVQKK QSQNVLRKIL HDVPLMHTKR MFPSQKSGLN QDDPSDTRKE NEKFSVLRTM  360
VPTVNEVDKE SILNNTIKYL QELEARVEEL ESCMGSVNFV ERQRKTTENL NDSVLIEETS  420
GNYDDSTKID GNSGETEQVT VSRDKTHLRV KLKETEVVIE VRCSYRDYIV ADIMETLSNL  480
HMDAFSVRSH TLNKFLTLNL KAKFRGAAVA SVGMIKRELR RIIGDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-13232219192Transcription factor MYC3
4rqw_B2e-13232219192Transcription factor MYC3
4rs9_A2e-13232219192Transcription factor MYC3
4yz6_A2e-13232219192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7109s0015.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879439.10.0transcription factor MYC1 isoform X1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLD7M5N50.0D7M5N5_ARALL; F6N23.22 protein
STRINGfgenesh1_pm.C_scaffold_60029450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein