PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.71473s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 91aa    MW: 10704.7 Da    PI: 9.7603
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.71473s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.38.3e-18750245
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          rie+   r+  +skR++g++KKAeE+  LCd e+ +i++s+t+k
  Araha.71473s0001.1.p  7 RIESLKERSSKYSKRKKGLFKKAEEVALLCDCEIILIVVSPTDK 50
                          89***************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.909158IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-21276IPR002100Transcription factor, MADS-box
CDDcd002664.17E-20281No hitNo description
SMARTSM004321.1E-18257IPR002100Transcription factor, MADS-box
PfamPF003193.9E-17753IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-82035IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-83556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MKIKLNRIES LKERSSKYSK RKKGLFKKAE EVALLCDCEI ILIVVSPTDK PTLFHTRSKS  60
FSKIYERYCM LSLQEREERC DLSDLYIIIR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.71473s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884452.13e-47agamous-like MADS-box protein AGL66
TrEMBLD7LDF51e-53D7LDF5_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_40004812e-54(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.12e-36AGAMOUS-like 33