PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.71743s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 176aa    MW: 20053.1 Da    PI: 4.246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.71743s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-081222446
                          HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                          W++Ia+++  gRt++++k++w++
  Araha.71743s0001.1.p  1 WSKIASHFS-GRTDNEIKNHWNT 22
                          *********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-11135IPR009057Homeodomain-like
PfamPF002491.0E-5122IPR001005SANT/Myb domain
CDDcd001672.19E-5122No hitNo description
PROSITE profilePS5129416.363128IPR017930Myb domain
SuperFamilySSF466893.67E-7133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
WSKIASHFSG RTDNEIKNHW NTKIKKKMKH LGLDPATHKP MNDITHQTDP NQDTKPNMCS  60
TISEGEEIKD QTPKDDVITE TTKTLILSDN DEELLVKNNK TLCVEEVDLE YLFETQGNEI  120
SSSSFSSLYS NISRSESSSY LAEDSISLEQ WDLDMTDPFV PWDLFANLDD NLFFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.71743s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638170.0AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankAY5196220.0AY519622.1 Arabidopsis thaliana MYB transcription factor (At5g14340) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001330910.11e-101myb domain protein 40
RefseqNP_196938.21e-100myb domain protein 40
TrEMBLA0A1P8BC921e-99A0A1P8BC92_ARATH; Myb domain protein 40
TrEMBLF4K6R67e-99F4K6R6_ARATH; Myb domain protein 40
STRINGAT5G14340.12e-99(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-91myb domain protein 40