PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.71984s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 151aa    MW: 17079.6 Da    PI: 10.3587
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.71984s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.4e-1050105560
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                           k+ +r ++NR+AA++sR +K ++++ L +++ eL+   ++L+++l   +++  +l+
  Araha.71984s0002.1.p  50 KKLKRIISNRVAAQKSRWKKVQYLDALVKRSMELQRHVSMLRSQLAIASEQKRYLE 105
                           899***************************************99987777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-1142107No hitNo description
SMARTSM003384.4E-1146110IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.07148111IPR004827Basic-leucine zipper domain
PfamPF001707.2E-850106IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-950101No hitNo description
CDDcd147034.62E-1151102No hitNo description
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSFPVVATSF GVSQSGSQAG EKKGGYVHYE VEPGFTIRMR HDIDPTTDPK KLKRIISNRV  60
AAQKSRWKKV QYLDALVKRS MELQRHVSML RSQLAIASEQ KRYLENEQRQ LKEYISARLQ  120
RCIDNDGVIT EGKAEIETLK KNLATLSNLA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.71984s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9609741e-151AY960974.1 Arabidopsis thaliana activator of spomin LUC3 (ASML3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873298.16e-95basic leucine zipper 34
TrEMBLD7LZY21e-93D7LZY2_ARALL; DNA binding protein
STRINGfgenesh2_kg.6__672__AT5G07160.12e-94(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144181821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.12e-93bZIP family protein