PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7205s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 478aa    MW: 53274 Da    PI: 6.7313
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7205s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.2e-16741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Araha.7205s0002.1.p  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                         ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-11546No hitNo description
CDDcd002023.74E-17663No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.5E-13740IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003205.4E-14741IPR000679Zinc finger, GATA-type
PfamPF139194.8E-9235326IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA RAEGDEIEIE  60
DHRAQRVMIK GMSLNKKIPK RKPYQENFTV KRANLEFHAG FKRKALDEEA SNRSSSGSVV  120
SNSESCAQSN AWDATFPCKR RTCVGRPKAA SSVEKLTKDL YTILQEQQSS CLSGTSEEDL  180
LFESETPMLL GHGSVLMRDP HSGVREEESE ASSLLVESSK SSSVHSVKFG GKAIKQEQLK  240
RSKSQVLGRH SSLLCSIDLK DVFNFDEFIE KFTEEEQEKL MKLVPQVDSV DRPDSLRSMF  300
ESSQFKENLS LFQQLVADGV FETTSSYSSA SKLEDIKTLA KLALSDPNKS HLLGNYYMLK  360
EQRKRTEDSV TTASTVSNLS PSKNNSLVTI ERPCESLNQN FSETRGVMRS PKEVMKIRSK  420
HIETEEILEN SVSSFKPMSC GGPLVFSYED NDISDQDLLL DVPSNGSFPQ AELLHMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7205s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0202590.0BT020259.1 Arabidopsis thaliana At5g47140 gene, complete cds.
GenBankBT0204500.0BT020450.1 Arabidopsis thaliana At5g47140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865139.10.0GATA transcription factor 27 isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLD7MPX30.0D7MPX3_ARALL; Zinc finger family protein
STRINGfgenesh1_pg.C_scaffold_80000660.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27