PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.7206s0005.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 285aa MW: 31389.8 Da PI: 9.8563

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.7206s0005.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.5e-38	61	119	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss Araha.7206s0005.2.p 61 EKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 119 789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	58	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-33	62	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MINVKPMEQM ISSTNNNTSQ QQPTFIATNA RPSATASNGG SGGNNNNTAT TMETRKARPL 60 EKVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNVPVGG SSRKNKRSST 120 PLASPSNPKL PDLNPPILFS SQIPNKSKDL NLLSFPVMQD HHHHALELLR SNGVSSRGMN 180 TFLPGQMMDS NSVLYSSLGF PAMPDYKQSN NNLSFSVDHH QGIGHNTINS NQRAQDNNDD 240 MNGASRVLFP FSDMKELSST TQEKSHGNNT YWSGMFSNTG GSSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.7206s0005.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117352	0.0	AK117352.1 Arabidopsis thaliana At3g61850 mRNA for putative transcription factor BBFa, complete cds, clone: RAFL16-91-P20.
GenBank	BT033127	0.0	BT033127.1 Arabidopsis thaliana unknown protein (At3g61850) mRNA, complete cds.
GenBank	X97941	0.0	X97941.2 A.thaliana mRNA for zinc finger protein DAG1 (BBFa).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002876642.1	0.0	dof zinc finger protein DOF3.7 isoform X3
Swissprot	Q43385	0.0	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	D7LSQ0	0.0	D7LSQ0_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.5__2679__AT3G61850.1	0.0	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.1	0.0	Dof family protein

Link Out ? help Back to Top
Phytozome	Araha.7206s0005.2.p