PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7299s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 465aa    MW: 51947.9 Da    PI: 4.7468
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7299s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.95.9e-37381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed++++ ++sws ++nsf+v+d++ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Araha.7299s0005.1.p  38 FLSKTYDMVEDPTTDAIVSWSPTNNSFIVWDSSEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 118
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+ks+
  Araha.7299s0005.1.p 119 HLLKTISRRKSA 130
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-4031122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-6234127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.3E-3535127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.1E-3338127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDGVTGGGTN ISEAVTAPPP RNPHPATLLS ANSLPPPFLS KTYDMVEDPT TDAIVSWSPT  60
NNSFIVWDSS EFSRDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LKTISRRKSA QGHGSSSNPQ SQALSQGQSS MAALSSCVEV GKFGLEEEVE QLKRDKNVLM  180
QELVKLRQQQ QTTDSKLQVM VKHLQAMEQR QQQIMSFLAK AVRNPTFLSQ FIQTQTDSNM  240
HVTEANKKRR LREDTTDAAT AENYSRSSDA SDGQIVKYQP HRNDSMMWNM MKTDDKFPFL  300
DGSSSPNRVS GVTLQEVLPT TSGQSQAYAP IPSGQPLSYL PSTSTSLPDT IMPEISRMPQ  360
LTRESINDFP TENYMDTQTN VPDTFISPSP FLDGGSVPIQ LDGIPEDPEI DELMSNFEFL  420
EEYPPESPVL GDATTLENSN NTNGRHMDKL IEELDLLTSN KQQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-293612727129Heat shock factor protein 1
5d5v_B2e-293612727129Heat shock factor protein 1
5d5v_D2e-293612727129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7299s0005.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293470.0AK229347.1 Arabidopsis thaliana mRNA for heat shock transcription factor HSF1, partial cds, clone: RAFL16-59-L13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873200.10.0heat stress transcription factor A-1a
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLD7M9G00.0D7M9G0_ARALL; Heat shock factor
STRINGfgenesh2_kg.7__2533__AT4G17750.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]