PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7395s0009.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 378aa    MW: 43232.4 Da    PI: 5.5416
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7395s0009.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.95.8e-2858143286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                          W ++e+++Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+n+ k++kk k ++ ++ ts+ s++++y++++e
  Araha.7395s0009.2.p  58 WAQDETRCLISLRREMDNLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNILKEFKKAKYQDDDKaTSGGSTKMSYYKEIE 143
                          ****************************************************************99998879************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.54850114IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.1E-550119IPR009057Homeodomain-like
SMARTSM007176.3E-554116IPR001005SANT/Myb domain
SuperFamilySSF466893.93E-555150IPR009057Homeodomain-like
CDDcd122031.45E-2956121No hitNo description
PfamPF138373.8E-1957144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MFVSDNNPSR DMNLMIDVTS SNGDLPLQQQ HHQIILGDSS GGEDHEIIKA PKKRAETWAQ  60
DETRCLISLR REMDNLFNTS KSNKHLWEQI SSKMREKGFD RSPTMCTDKW RNILKEFKKA  120
KYQDDDKATS GGSTKMSYYK EIEDIFTERN KKVALYKSPS TATPPSSAKV DSFMQFTDKG  180
FEDTGISFTS VEANGRPTLN LETQLDHDGL PLPIAADPVT ANGVPPWSWR DTAGNGGDGQ  240
PFVGRIITVK FGDYTRRFGI DGTAEAIKEA IRSAFRLRTR RAFWLEDEEQ VIRSLDRDMP  300
LGNYTLRVDE GIAVRVCHYD ESDPLPVHQE EKIFYTEEYY RDFLARRGWT CLREFDAFRN  360
IDNMDDLQSG VLYRGMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A4e-4352141186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00003PBMTransfer from 484361Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7395s0009.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723700.0AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880067.10.0trihelix transcription factor GT-4 isoform X2
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLD7LQX50.0D7LQX5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__353__AT3G25990.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein