PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7399s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 539aa    MW: 58879.4 Da    PI: 6.6543
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7399s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.65.3e-21156242186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L++a++++ ++l+rg+l++ +Weev++ +  r +++++s +qCk+k++nl+kryk ++++++++  +s s++p+f+++e
  Araha.7399s0005.1.p 156 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVseRCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSASHWPWFKKME 242
                          5*************************************888899****************************9.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-22154244No hitNo description
Gene3DG3DSA:3.40.1160.109.8E-67289530IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.57E-53297530IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.43E-119299531No hitNo description
PfamPF006961.3E-24300510IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ HHHHHQVLHH TPYAPRRFNP KPSNQIHLPH HQRNGDEDDE  60
NDVVVEASSA FHGVNPFSAD ENSNPYDDNN AGVDEDEDLD ANRSRIGGVR VEKRQSQEEL  120
SDGGTTNGGE ITPYGSFKRP RTSSSSAGEY RKDREEWSDA AIACLLDAYS DKFTQLNRGN  180
LRGRDWEEVA SSVSERCEKL SKSVEQCKNK IDNLKKRYKL ERHRMSSGGT SASHWPWFKK  240
MEDIVGNSLA TKGASDEDRS GSSMGNTVKP ARRYPLVTYN PGVQINNVKS KATSNPRWRR  300
VVLKISGAAL ACTGPNNIDP KVINLIAREV AMACRLGVEV AIVVGSRNFF CGSTWITATG  360
LDRTTAFHIS MMASVMNSAL LQSSLEKIGV QARLQTAISV QGVGEPYNRQ RATRHLDKGR  420
VVIFGGIGAT LGNPLLSSDA SAALRAIDIN AEAVVKGTNV DGVYDCHSQD SNVTFEHISF  480
QDLASRGLTS MDTMALNFCE ENSIPVVVFN FLEAGNITKA LCGEQVGTLI DRTGRGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-572905301239Uridylate kinase
3ek5_B4e-572905301239Uridylate kinase
3ek5_C4e-572905301239Uridylate kinase
3ek5_D4e-572905301239Uridylate kinase
3ek5_E4e-572905301239Uridylate kinase
3ek5_F4e-572905301239Uridylate kinase
3ek6_A4e-572905301239Uridylate kinase
3ek6_B4e-572905301239Uridylate kinase
3ek6_C4e-572905301239Uridylate kinase
3ek6_D4e-572905301239Uridylate kinase
3ek6_E4e-572905301239Uridylate kinase
3ek6_F4e-572905301239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7399s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566366.10.0aspartate/glutamate/uridylate kinase family protein
TrEMBLA0A384L5830.0A0A384L583_ARATH; Uncharacterized protein
TrEMBLQ94JR10.0Q94JR1_ARATH; AT3g10030/T22K18_15
STRINGAT3G10030.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein