PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7406s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 248aa    MW: 26749.3 Da    PI: 7.8892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7406s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0598120123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ CgksFs+   L  H  +H
  Araha.7406s0003.1.p  98 YKCSVCGKSFSSYQALGGHKTSH 120
                          9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.73E-1097120No hitNo description
PROSITE profilePS5015711.28198125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-598120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002698120IPR015880Zinc finger, C2H2-like
PfamPF139128.2E-1498122IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576675.73E-10161188No hitNo description
PROSITE profilePS501579.349166188IPR007087Zinc finger, C2H2
SMARTSM003550.82166188IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-11166190IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MALETLNSPT ATTTDRPLLR YREEMEPENL EQWAKRKRTK RQRFDHGHQN QETNKKYLPS  60
EEEYLALCLL MLARGSAVQS PPLPPLPSRP SPSDHRDYKC SVCGKSFSSY QALGGHKTSH  120
RKPTNNSITS GNQELSNNSH SNSGSVVINV TVNNTSNGVS QSGKIHTCSI CFKSFSSGQA  180
LGGHKRCHYD GGSNGNGNGS SSNSVEVVAG SDVSDVDNER SSEESAIGGH RGFDLNLPAD  240
QVSVTIS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7406s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076450.0AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14.
GenBankAY1233280.0AY123328.1 Arabidopsis thaliana zinc finger protein OZAKGYO (OZAKGYO) gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869381.11e-146zinc finger protein AZF1
SwissprotQ9SSW11e-144AZF1_ARATH; Zinc finger protein AZF1
TrEMBLD7MUQ51e-145D7MUQ5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__2666__AT5G67450.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-129zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]