PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7659s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 413aa    MW: 46195.1 Da    PI: 4.8051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7659s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
  Araha.7659s0001.1.p 22 KGPWTQAEDNLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                         79*******************************************996 PP
2Myb_DNA-binding46.58.2e-1575118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+ E+++ ++++++lG++ W++ a +++ gRt++++k++w++
  Araha.7659s0001.1.p  75 KGAFTEKEEKRVIELHALLGNK-WARMAGELP-GRTDNEIKNFWNT 118
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2591769IPR017930Myb domain
SuperFamilySSF466891.12E-2820116IPR009057Homeodomain-like
SMARTSM007173.3E-152171IPR001005SANT/Myb domain
PfamPF002492.7E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-232376IPR009057Homeodomain-like
CDDcd001673.05E-122469No hitNo description
PROSITE profilePS5129423.81770124IPR017930Myb domain
SMARTSM007177.9E-1474122IPR001005SANT/Myb domain
PfamPF002491.0E-1375118IPR001005SANT/Myb domain
CDDcd001677.03E-1077120No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2377122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGKVRHDSGS DDETSIDQSF TKGPWTQAED NLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGAFTE KEEKRVIELH ALLGNKWARM AGELPGRTDN EIKNFWNTRL  120
KRLQRLGLPV YPDEVREQAM NAAIQSGLNT DSLDGHHSQD SLEADCVEIP ELNFQHLPLN  180
QCSSYYQSML RNVPPTGVFV RQRPCFFQPN MYNLITTPPY MSTGKRSREP ETAFPGGYVM  240
NEQSPPLWNY PFVENISEQL PDSHLLGNAT YSSSSPGPLI HGVEKLELPS FQYLEEPGGW  300
GAEQSDQMPE HHESDNTLVQ SPLTDQTPSD CPSSLYDGLL ESVVYGSSGE KPATDTDSES  360
SLFQSSLLGH TEFTPANENR TDLGSTSSNE GRITFEGDWI RLLLGEDRYS TK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30201225106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7659s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465710.0DQ446571.1 Arabidopsis thaliana clone pENTR221-At2g26960 myb family transcription factor (At2g26960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880852.20.0transcription factor MYB104
SwissprotQ9SM271e-130MY104_ARATH; Transcription factor MYB104
TrEMBLD7LFF10.0D7LFF1_ARALL; Predicted protein
STRINGAl_scaffold_0004_9750.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.10.0myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]