PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7659s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 311aa    MW: 35615 Da    PI: 4.8675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7659s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-151863348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +WT+eEd+ll+d+v+q+G  tW+ ++++ g+  ++k+c+ rw ++l
  Araha.7659s0002.1.p 18 KWTQEEDKLLKDYVNQHGDVTWTDVPKHTGLSHSPKSCRFRWMNHL 63
                         8*****************99************************97 PP
2Myb_DNA-binding43.38.6e-1469112146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++++T+eE+ + +++ + lG++ W+  +++++ gRt++++k++w+ 
  Araha.7659s0002.1.p  69 KDAFTEEEERRVIELQAVLGNK-WAQMSKELP-GRTDNEIKNFWNV 112
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0331163IPR017930Myb domain
SuperFamilySSF466893.13E-2513110IPR009057Homeodomain-like
SMARTSM007178.6E-121565IPR001005SANT/Myb domain
CDDcd001674.74E-111863No hitNo description
Gene3DG3DSA:1.10.10.604.4E-201870IPR009057Homeodomain-like
PfamPF139213.9E-141979No hitNo description
PROSITE profilePS5129421.66264118IPR017930Myb domain
SMARTSM007171.2E-1168116IPR001005SANT/Myb domain
CDDcd001672.45E-1071111No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2071115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MIQDQADDLL TMKKTYTKWT QEEDKLLKDY VNQHGDVTWT DVPKHTGLSH SPKSCRFRWM  60
NHLRPGLKKD AFTEEEERRV IELQAVLGNK WAQMSKELPG RTDNEIKNFW NVRRQKLKRL  120
GLPVYPVEVR GQAISTALQH GVNIDLLDPQ DLLMADNDVE RNNLPLNQCS PYYQSMLANG  180
QPREPETTFP FTDGYVMNEQ NPNLLNCTFV DSTQEQLPDS HLFGNVTYSS LPMPLIHGVG  240
NLELPSFQGF NAHQEPSSFG AEQYNPMLNL EPHNTLVQPP LIGQTPTDFP STFYDELLEL  300
VYGGERPKTD T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-241911110101B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7659s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0051681e-121AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence.
GenBankAC0056231e-121AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence.
GenBankATU269341e-121U26934.1 Arabidopsis thaliana DNA-binding protein (MYB104) gene, complete cds.
GenBankCP0026851e-121CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885452.10.0LOW QUALITY PROTEIN: transcription factor MYB104
SwissprotQ9SM271e-163MY104_ARATH; Transcription factor MYB104
TrEMBLD7LFE91e-173D7LFE9_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_40005371e-174(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26950.11e-165myb domain protein 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]