PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.7683s0009.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

EIL

Protein Properties

Length: 366aa MW: 42094.6 Da PI: 4.1166

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.7683s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	73.4	5.9e-23	77	250	220	353
GHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXX.XXXXXXXXXXXXX.........XXXXXX.XXXXXXX CS EIN3 220 tieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqsp.kvtlsceqkedve.........gkkeskikhvqavk 299 + +++r+l+rqsk+lqdkm+ake++++++vlnqee+ +++++ + + ++q+p k+t+ ++++ + +++e+ k v Araha.7683s0009.1.p 77 SGIRVRRLARQSKCLQDKMMAKETDTWSRVLNQEEARLNRLKISDDEDEDQEPaKFTCFDQESSLNAcffvaedqgKNQEPAYKRV---- 162 5689***********************************999664444444144444444444448886544333333333333.... PP XXX......................................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXX CS EIN3 300 tta......................................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisq 351 + ++++ +krk k+se++++ s+ ++tcq+s++++s+++l+f dkn ++ Araha.7683s0009.1.p 163 --DqesslnncflvaqdqelrkekrvdqetslntcflvdqdQEQLSNKRKGKFSEQEAMLSS--VYTCQNSSCPSSDVSLGFVDKNLRTG 248 ..2345666999999*****************************************99..8**********************9 PP XX CS EIN3 352 ne 353 +e Araha.7683s0009.1.p 249 HE 250 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	3.5E-7	79	111	No hit	No description
Gene3D	G3DSA:1.10.3180.10	7.3E-11	80	118	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	8.76E-8	80	114	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MVEVQDLEPL SPIQDEDGDD FEEDEYEFER FGEEISYDDL KKRMWKDRNL MCKLKQQKRD 60 NHSSVISSPS SSSSSSSGIR VRRLARQSKC LQDKMMAKET DTWSRVLNQE EARLNRLKIS 120 DDEDEDQEPA KFTCFDQESS LNACFFVAED QGKNQEPAYK RVDQESSLNN CFLVAQDQEL 180 RKEKRVDQET SLNTCFLVDQ DQEQLSNKRK GKFSEQEAML SSVYTCQNSS CPSSDVSLGF 240 VDKNLRTGHE IECLYGTQEL VNQSSGGGSD GFVRSMTTSD DDYSASSKAE DTRDYHNQDG 300 NWLDYLWFER LHDLNCSDQG FEDQTSTVDL NQLPDHSDSN QTMNEEDFSL WDMGCEDRDI 360 YMSQD*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MVEVQDLEPL SPIQDEDGDD FEEDEYEFER FGEEISYDDL KKRMWKDRNL MCKLKQQKRD  60
NHSSVISSPS SSSSSSSGIR VRRLARQSKC LQDKMMAKET DTWSRVLNQE EARLNRLKIS  120
DDEDEDQEPA KFTCFDQESS LNACFFVAED QGKNQEPAYK RVDQESSLNN CFLVAQDQEL  180
RKEKRVDQET SLNTCFLVDQ DQEQLSNKRK GKFSEQEAML SSVYTCQNSS CPSSDVSLGF  240
VDKNLRTGHE IECLYGTQEL VNQSSGGGSD GFVRSMTTSD DDYSASSKAE DTRDYHNQDG  300
NWLDYLWFER LHDLNCSDQG FEDQTSTVDL NQLPDHSDSN QTMNEEDFSL WDMGCEDRDI  360
YMSQD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.7683s0009.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013395	0.0	AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866649.1	1e-174	ETHYLENE INSENSITIVE 3-like 5 protein
Swissprot	Q9FJQ5	1e-165	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBL	D7MT78	1e-173	D7MT78_ARALL; Ethylene insensitive 3 family protein
STRING	fgenesh2_kg.8__2548__AT5G65100.1	1e-173	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5879	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65100.1	1e-167	EIL family protein

Link Out ? help Back to Top
Phytozome	Araha.7683s0009.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]