PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7761s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 248aa    MW: 28460.1 Da    PI: 9.6876
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7761s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-241762449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          n+sn qvtfskRr g++KKA+EL++LCda++a+i+fs++gk+y +
  Araha.7761s0003.1.p 17 TNESNLQVTFSKRRSGLFKKASELCTLCDAKIAIIVFSPSGKVYSF 62
                         699*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-36665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.59666IPR002100Transcription factor, MADS-box
CDDcd002652.81E-33774No hitNo description
SuperFamilySSF554557.19E-28789IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-21828IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251662IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-212843IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-214364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MARKNLGRRK IEIVKMTNES NLQVTFSKRR SGLFKKASEL CTLCDAKIAI IVFSPSGKVY  60
SFGHPNVNVL LDQFSERVLR QNNTNLDESH TKLHIQMLNQ SLTEAMAEKE KEQRNKEWLV  120
QNEREIKNVE EWWTNSLKEL NLTQLTSMKR ALEDLKKEVN ERASQFHHTN SNFYVGSSSN  180
AVVPEAVNGG NISINQGFFA QNGTPTHVQT LPFGFNVMNR TPTGYNNCQI QNQEFKQVHP  240
YYGPRYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-16676171MEF2 CHIMERA
6byy_B3e-16676171MEF2 CHIMERA
6byy_C3e-16676171MEF2 CHIMERA
6byy_D3e-16676171MEF2 CHIMERA
6bz1_A3e-16676171MEF2 CHIMERA
6bz1_B3e-16676171MEF2 CHIMERA
6bz1_C3e-16676171MEF2 CHIMERA
6bz1_D3e-16676171MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7761s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889362.11e-170agamous-like MADS-box protein AGL28
SwissprotQ9LMM81e-132AGL28_ARATH; Agamous-like MADS-box protein AGL28
TrEMBLD7KQ651e-168D7KQ65_ARALL; Predicted protein
STRINGAl_scaffold_0001_741e-169(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17507710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.11e-135AGAMOUS-like 28
Publications ? help Back to Top
  1. Cheng JZ,Zhou YP,Lv TX,Xie CP,Tian CE
    Research progress on the autonomous flowering time pathway in Arabidopsis.
    Physiol Mol Biol Plants, 2017. 23(3): p. 477-485
    [PMID:28878488]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]