PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.7962s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 229aa MW: 25682 Da PI: 7.1977

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.7962s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	72	116	6	53
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 rE++RRdr+N++f+eL ++l + +++K +K++i A++ +++ Araha.7962s0002.1.p 72 AFREKQRRDRLNDKFSELSSILEPG---RAPKTDKVAIINDAIRMVNQ 116 569*******************9...9************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.557	66	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-12	70	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-7	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	72	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-9	72	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.90E-8	74	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVSPENTNWL SDYPLIDGAF SDQNPSFPWQ IDASATVSVE VDGFLCDSDV IKESGSRKRI 60 KTESCTGSSS KAFREKQRRD RLNDKFSELS SILEPGRAPK TDKVAIINDA IRMVNQARDE 120 AQKLKDLNSN LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPQPCFLP 180 NPPTLSQAQA PGSKLVPFTT YPGFAMWQFM PPAAVDTSQD HVLRPPVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.7962s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488632	0.0	AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY085619	0.0	AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBank	BT002433	0.0	BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBank	BT006273	0.0	BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869711.1	1e-157	transcription factor bHLH115
Swissprot	Q9C682	1e-156	BH115_ARATH; Transcription factor bHLH115
TrEMBL	D7KGW7	1e-155	D7KGW7_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.1__4178__AT1G51070.1	1e-156	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-146	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.7962s0002.1.p

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]