PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7999s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 251aa    MW: 28097.9 Da    PI: 7.0899
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7999s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.74.7e-372379561
               zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          + c+rCds+ntkfCyynnys+ qPryfCk+CrryWt+GG+lrnvP+Gg++r ++++
  Araha.7999s0005.1.p 23 PRVCARCDSDNTKFCYYNNYSVLQPRYFCKNCRRYWTHGGTLRNVPIGGSSRAKRAR 79
                         568*************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-252477IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.8232478IPR003851Zinc finger, Dof-type
PfamPF027011.1E-302477IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDDLNVFANE DNQVNGVKPT PPPRVCARCD SDNTKFCYYN NYSVLQPRYF CKNCRRYWTH  60
GGTLRNVPIG GSSRAKRARV DQPPVAQMVP EIQPVNHPPF LNVQENIDFV GSFGASSSAA  120
AVGNHFGSLS EIHGGMVTNV HPTRTFRPNH RLAFPDGSFE QDYYDVGSDN LLVNQQVGGY  180
VDNYNGYHMN QVEQHQWNQS FNNTMNMNHN NASTSGNSRG SDMNVNNDNN KIRYLNSVIM  240
HPCHLEKDGP *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00446DAPTransfer from AT4G21080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7999s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0219600.0AL021960.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7J7 (ESSA project).
GenBankAL1615540.0AL161554.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872173.11e-159dof zinc finger protein DOF4.5
SwissprotO495501e-121DOF45_ARATH; Dof zinc finger protein DOF4.5
TrEMBLA0A178V5F11e-118A0A178V5F1_ARATH; DOF4.5
STRINGBostr.10689s0057.1.p1e-124(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.11e-122Dof-type zinc finger domain-containing protein