PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8526s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 242aa    MW: 26949.1 Da    PI: 5.7268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8526s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-2087137255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ta eAa+a+++a+ +l+g
  Araha.8526s0003.1.p  87 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDTAVEAARAYDQAAFQLRG 137
                          7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3286145IPR001471AP2/ERF domain
PROSITE profilePS5103224.77787145IPR001471AP2/ERF domain
PfamPF008472.7E-1487137IPR001471AP2/ERF domain
SMARTSM003806.2E-3787151IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2487147IPR016177DNA-binding domain
CDDcd000181.11E-3087145No hitNo description
PRINTSPR003671.5E-108899IPR001471AP2/ERF domain
PRINTSPR003671.5E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MATKQEALAI EFISQHLLTD FASMETDPSL FTNQVHNFHS ETSHRTISNQ SPKPNSTLNQ  60
RKPPLPNLSV PIMVSTKTEK EEEEERHYRG VRRRPWGKYA AEIRDPNKKG SRIWLGTYDT  120
AVEAARAYDQ AAFQLRGRKA ILNFPLDIRA TSETCFEEGA VGLGQRKRVK SSPPEEEKAA  180
VRVKVEEEES NTSETTEAEV EAVPLTPSSW MGFWDVGAGD GIFSIPQLSP TSPNFSVITV  240
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-27841451172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8526s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0886940.0AY088694.1 Arabidopsis thaliana clone 92102 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866445.21e-154ethylene-responsive transcription factor ERF104
SwissprotQ9FKG11e-136EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLD7MV401e-153D7MV40_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.8__2143__AT5G61600.11e-154(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-126ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]