PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8534s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 257aa    MW: 29604.3 Da    PI: 4.593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8534s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-115799754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           Er+RR+++N++++ Lr+++P+ +      Kl+Ka++ +  ++Y+++L
  Araha.8534s0004.1.p 57 VSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSIDYMQEL 99
                         57*********************66......***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0255099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.56E-105399No hitNo description
SuperFamilySSF474593.53E-1654121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1656116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-95799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGDS SSPDGAATSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI DQEKRLEAEI RELESRSLLL  120
ENPIRDYDCA NNFAENQLQD FSDNNGLRSK KFKHMDYDTR VQHYPIEVLE MKVTWMGEKT  180
VVVCITCSKK RETMLQLCKV LESLNLNILT TNFSSFTSRL STTLFLQADE EERSAVEAKI  240
QMAIAAYNDP NCLINF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8534s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1177300.0AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21.
GenBankAK1762010.0AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06.
GenBankAK1762760.0AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11.
GenBankAK2282010.0AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05.
GenBankBT0058690.0BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874507.10.0transcription factor bHLH27 isoform X2
SwissprotQ700E31e-158BH027_ARATH; Transcription factor bHLH27
TrEMBLD7MCG20.0D7MCG2_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.7__1196__AT4G29930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-137bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]