PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8604s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 165aa    MW: 19096.2 Da    PI: 4.9176
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8604s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-091071412155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k +yp++ ++  LA+++gL+++q+ +WF N+R ++
  Araha.8604s0004.1.p 107 KWPYPTEGDKLALAEETGLDQKQINNWFINQRKRH 141
                          569*****************************985 PP
2ELK34.93.4e-126182122
                  ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                         +LK+qLlrK++++++sLk EFs
  Araha.8604s0004.1.p 61 DLKDQLLRKFGSHISSLKLEFS 82
                         6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011884.2E-66182IPR005539ELK domain
PfamPF037893.1E-96182IPR005539ELK domain
PROSITE profilePS512139.9356181IPR005539ELK domain
PROSITE profilePS5007112.24481144IPR001356Homeobox domain
SuperFamilySSF466891.37E-1982154IPR009057Homeodomain-like
SMARTSM003892.8E-1183148IPR001356Homeobox domain
CDDcd000868.78E-1284145No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2786145IPR009057Homeodomain-like
PfamPF059207.7E-18101140IPR008422Homeobox KN domain
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
VVITCLENSN ANNLIINQVN QVKTPPNSGQ YDDGAVSSDE ELREDDDVAA QDIQQRSNDR  60
DLKDQLLRKF GSHISSLKLE FSKKKKNGKL PREARQALLD WWNVHYKWPY PTEGDKLALA  120
EETGLDQKQI NNWFINQRKR HWKPSENMPF AMMDDSNETF FTEE*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8604s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX813531e-173X81353.1 A.thaliana mRNA for ATK1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471943.13e-84PREDICTED: homeobox protein knotted-1-like 2 isoform X1
SwissprotP466407e-84KNAT2_ARATH; Homeobox protein knotted-1-like 2
TrEMBLA0A178WJ001e-82A0A178WJ00_ARATH; KNAT2
STRINGBostr.10273s0307.1.p2e-87(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.16e-78KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang XL,Yang ZP,Zhang J,Zhang LG
    Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana.
    Int J Mol Sci, 2013. 14(7): p. 14872-91
    [PMID:23863694]
  3. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  4. Scofield S,Dewitte W,Murray JA
    STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1.
    Plant Signal Behav, 2018.
    [PMID:24776954]
  5. Lee JE,Lampugnani ER,Bacic A,Golz JF
    SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis.
    Plant J., 2014. 80(1): p. 122-35
    [PMID:25060324]
  6. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  7. Li Z, et al.
    Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis.
    J Integr Plant Biol, 2016. 58(12): p. 959-970
    [PMID:27273574]
  8. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]