PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8819s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 384aa    MW: 43300.6 Da    PI: 6.4581
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8819s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-083273602154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Araha.8819s0008.1.p 327 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 360
                          569*****************************87 PP
2ELK26.81.2e-09281302122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++++++++++++E++
  Araha.8819s0008.1.p 281 ELKHELKQGFKEKIVDIREEIM 302
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.1E-19116160IPR005540KNOX1
PfamPF037903.8E-17118159IPR005540KNOX1
SMARTSM012563.0E-26167222IPR005541KNOX2
PfamPF037911.4E-19171221IPR005541KNOX2
PROSITE profilePS512139.446281301IPR005539ELK domain
PfamPF037892.9E-6281302IPR005539ELK domain
SMARTSM011886.2E-4281302IPR005539ELK domain
PROSITE profilePS5007111.985301364IPR001356Homeobox domain
SuperFamilySSF466891.58E-15303368IPR009057Homeodomain-like
SMARTSM003894.0E-10303368IPR001356Homeobox domain
CDDcd000866.75E-11304360No hitNo description
Gene3DG3DSA:1.10.10.608.8E-25308366IPR009057Homeodomain-like
PfamPF059201.7E-17321360IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009727Biological Processdetection of ethylene stimulus
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSFNSSHLLP PQEDLPLRHF ADQSQQPPSQ RHFSETPSLV TASFLNLPTT LTTADSDLAP  60
PHRNGDNSVA DTNPRWLSFH TEMQNTGEVR SEVIDGVNAD GETILGVVGG EDWRSASYKA  120
AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF  180
MSHYVVLLCS FKEQLQHHVC VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSEDEDDN  240
QVESEVNMYD GNLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE  300
IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR  360
NWNSNSSTSS TLSKNKRKRT GKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357378RKRNWNSNSSTSSTLSKNKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8819s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3066610.0AF306661.1 Arabidopsis thaliana homeodomain transcription factor KNAT5 (KNAT5) mRNA, complete cds.
GenBankBT0260330.0BT026033.1 Arabidopsis thaliana At4g32040 mRNA, complete cds.
GenBankD439620.0D43962.1 Arabidopsis thaliana mRNA for homeodomein containing protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869296.20.0homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A178V1Z30.0A0A178V1Z3_ARATH; KNAT5
STRINGAT4G32040.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5