PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8830s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 358aa    MW: 40211.6 Da    PI: 7.0864
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8830s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.22.4e-95935616374
                 GRAS  16 dlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                          ++ laq +Larl+++  +s++++p+qR+a++++eAL + +++      +a pp  t ++n + ++aa++ fse+sP+l+f ++taNq Il
  Araha.8830s0010.1.p   9 HTVLAQGILARLNHHlnSSNHKSPFQRAASHIAEALLSIIHN------DASPPLIT-PENLILRIAAYRSFSETSPFLQFVNFTANQSIL 91 
                          4559**********98788888*******************9......55555555.589****************************** PP

                 GRAS 104 eavege..ervHiiDfdisqGlQWpaLlqaLa...sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                          e+ +++  +r+HiiDfd+++G+QW +L+q+La    R++ + sl++T++++p s+  ++ el+ t+e+L+ fA e+++pfe+++l  + l
  Araha.8830s0010.1.p  92 ESCNESgfDRIHIIDFDVGYGGQWSSLMQELApggRRRNRASSLKLTVFAPPPSTvsDEFELRFTEENLKTFAGEIKIPFEIELLSIELL 181
                          ***99988************************8866779999*********9988899***************************99999 PP

                 GRAS 187 edleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                           + +++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y+++l++sl+a+
  Araha.8830s0010.1.p 182 LNPSYWPLSLRSseKEAIAVNLPVNSVASG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTSLLESLDAN 263
                          99999999888877*********9666654........5677************************************************ PP

                 GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                             ++++++++Er++++++i++++++++++     e+   Wr+ ++++GF+++++s++a++qa++ll++ +++g++ve+++ slv++W++
  Araha.8830s0010.1.p 264 ---QNQDDSSIERFWVQPSIEKLLMKRHRW----IERSPPWRSLFTQCGFSTASMSQTAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQR 346
                          ...89*************************....89999*************************************************** PP

                 GRAS 365 rpLvsvSaWr 374
                          ++Lv+vSaW+
  Araha.8830s0010.1.p 347 KELVTVSAWK 356
                          *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.5111336IPR005202Transcription factor GRAS
PfamPF035148.2E-939356IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
TGNNNNGDHT VLAQGILARL NHHLNSSNHK SPFQRAASHI AEALLSIIHN DASPPLITPE  60
NLILRIAAYR SFSETSPFLQ FVNFTANQSI LESCNESGFD RIHIIDFDVG YGGQWSSLMQ  120
ELAPGGRRRN RASSLKLTVF APPPSTVSDE FELRFTEENL KTFAGEIKIP FEIELLSIEL  180
LLNPSYWPLS LRSSEKEAIA VNLPVNSVAS GYLPLILRFL KQISPNVVVC SDRGCDRNDA  240
PFPNAVIHAL QYHTSLLESL DANQNQDDSS IERFWVQPSI EKLLMKRHRW IERSPPWRSL  300
FTQCGFSTAS MSQTAEAQAE CLLQRNPVRG FHVEKRQSSL VMCWQRKELV TVSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-282635633375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8830s0010.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0537600.0BT053760.1 Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884494.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLD7LBW20.0D7LBW2_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.4__2711__AT2G45160.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]