PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8855s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 422aa    MW: 47436.1 Da    PI: 5.1961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8855s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10221262854
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           Er RR + +++f  L+ l+P++     +K++ a+i+ +A++YIk+L
  Araha.8855s0002.1.p 221 TERERRVHFKDRFGDLKNLIPNP-----TKNDRASIVGEAIDYIKEL 262
                          6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.61E-10211264No hitNo description
SuperFamilySSF474592.82E-12212278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-10212277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.999213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-7219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-8221262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEGGGGMLEE IGCFDPNAPA EMTAESSFSL AEPPRTITVV GSNSNSNCSL EDLSEFHLSP  60
QDSSLPTSAS AYVHQFHINA TPNCDHQFPS SMHQTLQDPS YAQQSNNWDN GYQDFANLGP  120
NHTTPDLLSL LQLPRSSLPP FANPSLQDII MTTSSSVAYD PLFHLNFPLQ PPNGTFIGVD  180
QDQTEIENQG VNLMYDEENN NLDNGLNRKG RGSRKRKVFP TERERRVHFK DRFGDLKNLI  240
PNPTKNDRAS IVGEAIDYIK ELLRTIDEFK LLVEKKRTKQ RNREGDDVID ENFKAQSEVV  300
EQCLINKKNN ALRCSWLKRK SKFTEVDVRI IDDEVTIKIV QKKKINCLLF VSKVIDQLQL  360
DLHYVAGAQI GEHHSFLFNA KICEGSSVYA SAIADRVMEV LEKQYMEALS TNNGYHCYSS  420
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8855s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886190.0AF488619.1 Arabidopsis thaliana clone bHLH089 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0042620.0BT004262.1 Arabidopsis thaliana clone RAFL15-18-B21 (R20806) putative bHLH protein (At1g06170) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892324.10.0transcription factor bHLH89
RefseqXP_020870756.10.0transcription factor bHLH89
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLD7KFB60.0D7KFB6_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pg.C_scaffold_10004870.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]