PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8882s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 309aa    MW: 34672.6 Da    PI: 7.8959
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8882s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-131031683298
                          --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          + +t ++ d   + W++kl +r   + y++t+ W +Fv+++ +++gD+vvF +d   + + +++++r
  Araha.8882s0002.1.p 103 QFTTFKVIDFAEKNWTFKLMFRSEHQDYLMTDDWASFVREKSVQVGDVVVFLRDL-ISDKTRFSIRR 168
                          44689999*******************************************9542.33334666666 PP
2Auxin_resp24.11.5e-09191240554
           Auxin_resp   5 astksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds 54 
                          +s++   +++Y+P   +s+F v+++ ++++l+  ++ G R+  ++++ + 
  Araha.8882s0002.1.p 191 LSQAVNTSITYYPGYVNSDFLVPARAFQQSLRLAWASGIRVTKRIDNIEL 240
                          66677779*********************************988876544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-124963IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1298160IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-10105168IPR003340B3 DNA binding domain
CDDcd100179.23E-11105168No hitNo description
SuperFamilySSF1019361.7E-10106160IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.107109170IPR003340B3 DNA binding domain
PfamPF065073.0E-5194248IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MELSKILLSW SLAMSIYAKT DGTPVQRDLW NVCAGAEVAA PYVNDHVTYI PKGHADHCSA  60
SLEMHCRVND VGLMADPMTD EIFAKVEITQ LFGESRMCSA SDQFTTFKVI DFAEKNWTFK  120
LMFRSEHQDY LMTDDWASFV REKSVQVGDV VVFLRDLISD KTRFSIRRGS VSVGRRHYLN  180
LEAFSKAVGS LSQAVNTSIT YYPGYVNSDF LVPARAFQQS LRLAWASGIR VTKRIDNIEL  240
QGTIVEAIFK RPCLTVKWDE SEALDKFSPW ELSMKTERKG TMIFGVDLAS STIGQGTTTK  300
KKPKRGGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8882s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501551.11e-113PREDICTED: auxin response factor 4-like
STRINGXP_010501551.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2555833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.44e-20auxin response factor 2