PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.9032s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 189aa MW: 21855.7 Da PI: 4.9179

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.9032s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.3	2.7e-13	43	123	11	98
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k++++ +p +f+ ++g k + +tle++ g + ++++ ++ +++++++kGW++F++a+ L +g f+ F+++g+s+f +v +f+ Araha.9032s0005.1.p 43 IKEKMMKVPARFV-RFGPK--LTDNVTLETPVGFKRSIRI--KRIGDEVWFEKGWSDFAEAHFLSDGHFLFFHYKGDSCF--RVVIFD 123 5667899****.66633..5568***********..************************************..888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.06E-19	28	125	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-17	30	125	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.67E-13	32	123	No hit	No description
PROSITE profile	PS50863	10.687	33	125	IPR003340	B3 DNA binding domain
SMART	SM01019	9.2E-13	34	125	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.6E-11	42	123	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MRNMHTNRRS SARITSAATQ RRLKPEPEPA VKKFIKVILF KTIKEKMMKV PARFVRFGPK 60 LTDNVTLETP VGFKRSIRIK RIGDEVWFEK GWSDFAEAHF LSDGHFLFFH YKGDSCFRVV 120 IFDVSASEIE YPLDKVYVIE SDDDDDKEEV MAVMDDDEQR FTGFETSDDD GVIDLDDFVE 180 EEGTKSQH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.9032s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007504	1e-113	AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence.
GenBank	CP002684	1e-113	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020866754.1	1e-108	B3 domain-containing protein At1g49475
Swissprot	Q9XIB4	1e-100	Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBL	A0A178WDC1	2e-99	A0A178WDC1_ARATH; Uncharacterized protein
STRING	XP_010500489.1	1e-100	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	5e-98	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.9032s0005.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]