PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9126s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 305aa    MW: 35117.9 Da    PI: 7.9769
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9126s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.71.3e-281367155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         k+rlrW++eL +rF+ av+qLGG+ekAtPk ++++m+++ Ltl+h+kSHLQkYRl
  Araha.9126s0003.1.p 13 KQRLRWSCELQNRFIAAVNQLGGPEKATPKGLMKIMEIPELTLSHLKSHLQKYRL 67
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-261169IPR009057Homeodomain-like
SuperFamilySSF466893.94E-141271IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-211368IPR006447Myb domain, plants
PfamPF143792.2E-20109155IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDNKKNQKSK ESKQRLRWSC ELQNRFIAAV NQLGGPEKAT PKGLMKIMEI PELTLSHLKS  60
HLQKYRLVKS KRFVGNKQED EILEAQNPRD HQLDIIVTQK DDQPNKNLHI KEALEIQLEV  120
EKKLHEQIEV QRQLQVRIEA QGKYLQSVLI KAQETLSGYT SSNLGIDFAR SESELYRVAP  180
MENRSCLSSS FSELTQVDEE EKVEEKEAFL GSKKQENRGI RQTRSSVDSS LTLPESLETD  240
SNYQSVMRKS SELELMELKP EEVMKQKKRS WNGAVCMEQP IRKRGFRSHE GEDLGLSLNC  300
FKDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-161371260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-161371260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-161371260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-161371260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-161371260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-161371260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-161371260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-161371260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9126s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065354e-33AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence.
GenBankAF3616384e-33AF361638.1 Arabidopsis thaliana At1g26800/T24P13_21 mRNA, complete cds.
GenBankCP0026844e-33CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868747.10.0myb family transcription factor PHL8-like isoform X2
SwissprotF4I2742e-99PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLV4KSL81e-120V4KSL8_EUTSA; Uncharacterized protein
STRINGXP_006415961.11e-121(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.21e-100G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]