PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9126s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 358aa    MW: 41195.8 Da    PI: 6.799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9126s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-1696141147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v  +G+ +W++Ia++++ gR++k+c++rw++ 
  Araha.9126s0009.1.p  96 RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 141
                          899*****************************.***********996 PP
2Myb_DNA-binding59.48.1e-19148192147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ +
  Araha.9126s0009.1.p 148 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHVV 192
                          678*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5891142IPR017930Myb domain
SMARTSM007176.5E-1495144IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-2896189IPR009057Homeodomain-like
PfamPF002491.2E-1596141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2697149IPR009057Homeodomain-like
CDDcd001676.21E-1299140No hitNo description
PROSITE profilePS5129428.155143197IPR017930Myb domain
SMARTSM007172.4E-15147195IPR001005SANT/Myb domain
PfamPF002491.3E-15148191IPR001005SANT/Myb domain
CDDcd001671.81E-11150193No hitNo description
Gene3DG3DSA:1.10.10.601.9E-21150196IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MFITEKQVWM DEIAARRASS SSWDFHFNDN NIHHRHCNTS HEFEILKSPL GDVAANEEES  60
NNHNPNFSNS ESGKKETTDS GQSWSSSTSK PSVLGRGHWR PAEDVKLKEL VSIYGPQNWN  120
LIAEKLQGRS GKSCRLRWFN QLDPRINRRA FTEEEEERLM QAHRLYGNKW AMIARLFPGR  180
TDNSVKNHWH VVMARKYREH SSAYRRRKLM SNNPLKPHLT DNHDPNPNPN YHSFISTNHY  240
FAQPFPEFNL THHLVNNAPI TSDHNQLVLP FHCFQGYEGN EAPMVVSMFG NQMIVGDNVG  300
DTSDALCNFP YIDPRSQEKA EPNEAMHWIG MEAVDEEVVE KAKQQPHFFD FLGLGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31941965107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9126s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348160.0AF334816.1 Arabidopsis thaliana putative transcription factor (MYB117) mRNA, complete cds.
GenBankAY5195590.0AY519559.1 Arabidopsis thaliana MYB transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ4462910.0DQ446291.1 Arabidopsis thaliana clone pENTR221-At1g26780 myb family transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ6528620.0DQ652862.1 Arabidopsis thaliana clone 0000017266_0000012084 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893381.10.0transcription factor MYB117
SwissprotQ9LQX50.0MY117_ARATH; Transcription factor MYB117
TrEMBLD7KQL70.0D7KQL7_ARALL; T24P13.16
STRINGfgenesh1_pg.C_scaffold_10022870.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.20.0myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]