PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9281s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 177aa    MW: 19899.5 Da    PI: 10.4443
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9281s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.8e-14852347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT+eE++l++ + ++ G+g+Wk I+r + k Rt  q+ s+ qky
  Araha.9281s0002.1.p  8 PWTEEEHKLFLLGLQRVGKGDWKGISRNFVKSRTSTQVASHAQKY 52
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.687157IPR017930Myb domain
SuperFamilySSF466893.23E-17358IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17455IPR006447Myb domain, plants
SMARTSM007172.1E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-11752IPR009057Homeodomain-like
CDDcd001673.25E-9853No hitNo description
PfamPF002497.1E-11852IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
RERKRGVPWT EEEHKLFLLG LQRVGKGDWK GISRNFVKSR TSTQVASHAQ KYFLRRSNLN  60
RRRRRSSLFD MTTDTVMPME EDQVLMQENA SQLSSPVPEI NNFSIHPVMQ VFPEFPVPTG  120
NQPYGQLTSS INLTNLVPLT FQSSPAPLSL NLSLASSYHN EPSPSMHSAF NTIGVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9281s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0700980.0AY070098.1 Arabidopsis thaliana putative myb-related transcription activator protein (At1g74840) mRNA, complete cds.
GenBankAY0889740.0AY088974.1 Arabidopsis thaliana clone 117643 mRNA, complete sequence.
GenBankAY0963930.0AY096393.1 Arabidopsis thaliana putative myb-related transcription activator (At1g74840) mRNA, complete cds.
GenBankAY5195100.0AY519510.1 Arabidopsis thaliana MYB transcription factor (At1g74840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891423.12e-97transcription factor MYB1R1
TrEMBLQ9S7N64e-90Q9S7N6_ARATH; F25A4.19 protein
STRINGAT1G74840.16e-91(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.19e-89MYB_related family protein