PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9379s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family DBB
Protein Properties Length: 163aa    MW: 17804 Da    PI: 5.0299
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9379s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.3e-06445539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                          C+ +e+ e++  C +++  lC+ C  + H+        H+v
  Araha.9379s0005.1.p  4 QCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnklfqrhHRV 45
                         7*****************************767888884444 PP
2zf-B_box301.1e-096097338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38
                         ++ C+ ++e +  +fC +++ llC+dC +++H  ++H+
  Araha.9379s0005.1.p 60 APLCDICQERKGYFFCLEDRALLCNDCDEAIHtcNSHQ 97
                         689******99********************9434487 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883147IPR000315B-box-type zinc finger
CDDcd000213.19E-4347No hitNo description
SMARTSM003363.5E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.65558101IPR000315B-box-type zinc finger
SMARTSM003365.0E-1358101IPR000315B-box-type zinc finger
PfamPF006431.5E-76097IPR000315B-box-type zinc finger
CDDcd000219.54E-861101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKLFQ RHHRVALQKV AASATTASGA  60
PLCDICQERK GYFFCLEDRA LLCNDCDEAI HTCNSHQRFL LSGVQVSDQS LTENSECSTS  120
FGSETCQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL RP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9379s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1229160.0AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874613.11e-112B-box zinc finger protein 23
RefseqXP_020878462.11e-112B-box zinc finger protein 23
SwissprotO826171e-104BBX23_ARATH; B-box zinc finger protein 23
TrEMBLD7LY291e-110D7LY29_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.6__3002__AT4G10240.11e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.11e-107DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]