PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.9462s0010.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 245aa MW: 26204.2 Da PI: 10.1466

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.9462s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.5	4.9e-38	30	136	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasns 85 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++ Araha.9462s0010.1.p 30 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStasvsirG-------TNST 112 79*************************************************************9999977732222221.......2211 PP TCP 86 ssg....................k 89 s + k Araha.9462s0010.1.p 113 SLSssldhkptsllggsspfilgK 136 111233333344555433333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	35	89	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.8E-34	35	152	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSINNINNNN DGVMISSNGA LIEQPSSVVV KKPPAKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSIRGTN STSLSSSLDH 120 KPTSLLGGSS PFILGKRVRA DEDNNNHNSG GKDESFTTTP AGFWAVPARP DFGQVWSFTG 180 APQEMFLQQH HQQPLFVHQQ QQQQAAMGEA SAARVGNYLP GHLNLLASLS GGSPGSGRRE 240 EDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.9462s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007648	0.0	AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872048.1	1e-150	transcription factor TCP7
Swissprot	Q9FMX2	1e-143	TCP7_ARATH; Transcription factor TCP7
TrEMBL	D7M1Q2	1e-149	D7M1Q2_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.6__2323__AT5G23280.1	1e-150	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-110	TCP family protein

Link Out ? help Back to Top
Phytozome	Araha.9462s0010.1.p