PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.9614s0016.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WRKY

Protein Properties

Length: 290aa MW: 31564.5 Da PI: 8.8846

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.9614s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.4	2.3e-31	214	272	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Araha.9614s0016.1.p 214 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 272 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-31	207	274	IPR003657	WRKY domain
PROSITE profile	PS50811	32.879	208	274	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	211	274	IPR003657	WRKY domain
SMART	SM00774	6.3E-38	213	273	IPR003657	WRKY domain
Pfam	PF03106	4.1E-26	215	272	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MCSVSELLDM ENFQGDLTDV VRGIGGHVLS PETPPPNIWP LPLPHPPPSP SDLHINPFGD 60 PFVSMNDPLL QELNSVTNSG YFSNAGDNNN NNNGFLVPKV FEEDHIKSQC SIFPRIRISH 120 SNIIHDSSPC NSPGMSAHVV AAAAAASPRG IINVDTNSPR NCLLVDGNTF SSQIQISSPR 180 NLGLKRRKSQ AKKVVCIPAP AAMNSRSSGE VVPSDLWAWR KYGQKPIKGS PFPRGYYRCS 240 SSKGCSARKQ VERSRTDPNM LVITYTSEHN HPWPIQRNAL AGSTRSSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-26	188	274	2	79	Disease resistance protein RRS1
5w3x_D	1e-26	188	274	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00171	DAP	Transfer from AT1G30650	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.9614s0016.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228343	0.0	AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBank	BT006468	0.0	BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002890885.1	0.0	probable WRKY transcription factor 14
Swissprot	Q9SA80	0.0	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	D7KFM6	0.0	D7KFM6_ARALL; WRKY DNA-binding protein 14
STRING	scaffold_103413.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	1e-168	WRKY DNA-binding protein 14

Link Out ? help Back to Top
Phytozome	Araha.9614s0016.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]