PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9617s0011.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28201.2 Da    PI: 9.7349
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9617s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-19100150656
                          S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  Araha.9617s0011.1.p 100 RLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 150
                          679**********************************************98 PP
2HD-ZIP_I/II123.21.3e-3998185391
          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          k+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  Araha.9617s0011.1.p  98 KLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELR-AL 185
                          89***********************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.8E-24197IPR006712HD-ZIP protein, N-terminal
PROSITE profilePS5007116.11592152IPR001356Homeobox domain
SMARTSM003891.8E-1394156IPR001356Homeobox domain
SuperFamilySSF466899.41E-1898161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-1799150IPR009057Homeodomain-like
CDDcd000868.66E-14100153No hitNo description
PfamPF000461.9E-16100150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PfamPF021834.3E-11152186IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-26152195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGERDDGLGL SLSLSLGFNH KDPSSRLNPM PLASYSSSSH MHMQQSNYSH PQKIQNTWIN  60
MFQSSERNSD MRSFLRGIDV NRAPSTVVVD VEDDGAGKLR LSKEQALVLE ETFKEHSTLN  120
PKQKMALAKQ LNLRTRQVEV WFQNRRARTK LKQTEVDCEY LKRCCENLTD ENRRLQKEVS  180
ELRALKLSPH LYMHMKPPTT LTMCPSCERV AVTSSSSSVA SPVMTSSSPM GPMSPWAAIP  240
LRQRPAAGSH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9617s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4407810.0AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene).
GenBankAY0995650.0AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds.
GenBankBT0087130.0BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191598.11e-145homeobox-leucine zipper protein 3
SwissprotP466021e-146HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLD7LRP71e-141D7LRP7_ARALL; Uncharacterized protein
STRINGAT3G60390.11e-144(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-122homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]