PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9655s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 225aa    MW: 24297.1 Da    PI: 8.8275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9655s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-0580102123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k+Fs+   L  H  +H
  Araha.9655s0001.1.p  80 YKCSVCDKTFSSYQALGGHKASH 102
                          9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-1380104IPR007087Zinc finger, C2H2
SMARTSM003550.00380102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.20180107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-880102No hitNo description
Gene3DG3DSA:3.30.160.606.3E-480103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-8131158No hitNo description
PfamPF139127.7E-13136160IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099136163IPR007087Zinc finger, C2H2
SMARTSM003550.17136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALEALTSPR LASPIPPLFQ DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM  60
LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA SHRKNLSQTH SGGGDDQSTS  120
SATTTSAVTT GSGKSHVCTI CHKSFPSGQA LGGHKRCHYE GNNTSSVSNS EGAGSSSHVS  180
SSHRGFDLNI PPIPEFSTLN GDDEVMSPMP AKKARFDFPV KLQR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9655s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankAF2503360.0AF250336.1 Arabidopsis thaliana zinc finger protein STZ/ZAT10 (STZ/ZAT10) mRNA, complete cds.
GenBankAY0349980.0AY034998.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankAY0630060.0AY063006.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankX955730.0X95573.1 A.thaliana mRNA for salt-tolerance zinc finger protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174094.11e-146salt tolerance zinc finger
SwissprotQ962891e-147ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A178WMS31e-144A0A178WMS3_ARATH; ZAT10
STRINGAT1G27730.11e-145(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-122salt tolerance zinc finger
Publications ? help Back to Top
  1. Li C,Chang PP,Ghebremariam KM,Qin L,Liang Y
    Overexpression of tomato SpMPK3 gene in Arabidopsis enhances the osmotic tolerance.
    Biochem. Biophys. Res. Commun., 2014. 443(2): p. 357-62
    [PMID:24275141]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  4. Munekage YN,Inoue S,Yoneda Y,Yokota A
    Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(6): p. 1116-26
    [PMID:25293694]
  5. van Buer J,Cvetkovic J,Baier M
    Cold regulation of plastid ascorbate peroxidases serves as a priming hub controlling ROS signaling in Arabidopsis thaliana.
    BMC Plant Biol., 2016. 16(1): p. 163
    [PMID:27439459]
  6. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  7. Nguyen HM, et al.
    Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
    Front Plant Sci, 2017. 8: p. 1001
    [PMID:28717360]
  8. Geilen K,Heilmann M,Hillmer S,Böhmer M
    WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
    Sci Rep, 2017. 7(1): p. 14235
    [PMID:29079824]
  9. Liu X, et al.
    Histone Deacetylase AtSRT1 Links Metabolic Flux and Stress Response in Arabidopsis.
    Mol Plant, 2017. 10(12): p. 1510-1522
    [PMID:29107034]
  10. Huang K, et al.
    Arabidopsis calcium-dependent protein kinase AtCPK1 plays a positive role in salt/drought-stress response.
    Biochem. Biophys. Res. Commun., 2018. 498(1): p. 92-98
    [PMID:29196259]