PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9736s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 199aa    MW: 22624.2 Da    PI: 10.2317
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9736s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-162875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ede+l+ +v++ G g+W+++ +  g+ R++k+c++rw ++l
  Araha.9736s0002.1.p 28 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 75
                         79******************************************9996 PP
2Myb_DNA-binding48.52.1e-1581124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++
  Araha.9736s0002.1.p  81 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 124
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3172375IPR017930Myb domain
SMARTSM007171.6E-122777IPR001005SANT/Myb domain
SuperFamilySSF466897.26E-2927122IPR009057Homeodomain-like
PfamPF002495.2E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-222982IPR009057Homeodomain-like
CDDcd001672.68E-103075No hitNo description
PROSITE profilePS5129424.47876130IPR017930Myb domain
SMARTSM007172.5E-1580128IPR001005SANT/Myb domain
PfamPF002494.0E-1481124IPR001005SANT/Myb domain
CDDcd001676.58E-1183126No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2583128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MILYGGGGAG KDGGSTNHLS DGGVILKKGP WTAAEDEILA AYVRENGEGN WNAVQKNTGL  60
ARCGKSCRLR WANHLRPNLK KGSFTGDEER LIIQLHAQLG NKWARMAAQL PGRTDNEIKN  120
YWNTRLKRLQ RQGLPLYPPD IIPNHQLHPH PQHHHQQQQQ HNHHHHHHHQ QQQHHHQQMY  180
FQPQSSQPNT PSSSPLPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-29251281103C-Myb DNA-Binding Domain
1msf_C5e-29251281103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9736s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719790.0AF371979.1 Arabidopsis thaliana putative transcription factor MYB120 (MYB120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714707.11e-96transcription factor MYB120-like
RefseqXP_020883573.12e-96transcription factor MYB120
SwissprotQ94FL72e-94MY120_ARATH; Transcription factor MYB120
TrEMBLA0A3P6ANN22e-95A0A3P6ANN2_BRACM; Uncharacterized protein
STRINGBra035547.1-P9e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.15e-93myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]