PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.9776s0006.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 157aa MW: 18545 Da PI: 10.2589

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.9776s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.2	2.6e-09	26	122	32	127
NAM 32 evikevdiykvePwdL..pkkvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 i ++++y+ P d p +v+ + ++ + F++r + +++++++nra++ +g+W+ k k++++ ++++ g +++L f + a + Araha.9776s0006.1.p 26 FLIGDFELYEKTPLDDdyPGNVYFSPHNFWCFVERTRLSPNSSQPNRAIRqnrcNGRWRYNSK-KPIIR-NTQTLGYREILDFVN--A-D 110 358999999999976511557777888999***************977677798876.88888.899******93..3.3 PP NAM 116 gektdWvmheyr 127 +kt W ey Araha.9776s0006.1.p 111 NKKTGWRQSEYV 122 368**99996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	11.674	1	139	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-10	9	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MTTKRRSSIY MNFLLRLRGE RDRPDFLIGD FELYEKTPLD DDYPGNVYFS PHNFWCFVER 60 TRLSPNSSQP NRAIRQNRCN GRWRYNSKKP IIRNTQTLGY REILDFVNAD NKKTGWRQSE 120 YVKSVDDGTF QVVSVVLMML LISKNSSKRN HYSSDK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.9776s0006.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17442	7	9

Link Out ? help Back to Top
Phytozome	Araha.9776s0006.1.p