PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9920s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 252aa    MW: 28335.5 Da    PI: 9.9579
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9920s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-1261117155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aa+a++ a++k++g
  Araha.9920s0005.1.p  61 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDDEQKAARAYDLAALKYWG 117
                          78*******************87776664447766.557777**************98 PP
2AP248.71.8e-15160211155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Araha.9920s0005.1.p 160 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 211
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-1561127IPR016177DNA-binding domain
CDDcd000181.96E-1761127No hitNo description
PfamPF008471.2E-861117IPR001471AP2/ERF domain
SMARTSM003803.4E-2262131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-1362127IPR001471AP2/ERF domain
PROSITE profilePS5103217.20162125IPR001471AP2/ERF domain
PRINTSPR003671.2E-66374IPR001471AP2/ERF domain
CDDcd000184.58E-24160221No hitNo description
SuperFamilySSF541712.75E-18160220IPR016177DNA-binding domain
PfamPF008472.3E-10160211IPR001471AP2/ERF domain
PROSITE profilePS5103219.045161219IPR001471AP2/ERF domain
SMARTSM003801.5E-33161225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18161219IPR001471AP2/ERF domain
PRINTSPR003671.2E-6201221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLSLALSHGA CSDLINETNA SVVPVEEPVK IDEKRKRLTG KSQEKDLVPR KSVDSFGQRT  60
SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQGGYDD EQKAARAYDL AALKYWGPTT  120
HLNFPLSNYE KEIEELNNMN RQEFVAMLRR NSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  180
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI NRYDVKRICS SSTIVTSDQA  240
NRSPTSSGAG Q*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9920s0005.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6034170.0AY603417.1 Arabidopsis thaliana AP2/EREBP transcription factor (At1g72570) mRNA, complete cds.
GenBankDQ4464220.0DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBankDQ6529300.0DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891434.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-168AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLD7KR170.0D7KR17_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_20012540.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-165AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]