PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.04CKL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 219aa    MW: 25539.3 Da    PI: 5.0063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.04CKLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.3e-1362155199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvf 97 
                  ffkv+     ++s  l lp ++++   +k++ + + +l++ +g  W+vk   +  ++++ + +GWkeFv++ng++ +  ++vF  dg+s+f   +k+f
  Araip.04CKL  62 FFKVF--LPQFSSEKLLLPEEHVALTRMKERVPEEFILRNGRGGAWRVKT--SCIGEKVCFDDGWKEFVSDNGIQeACVIIVFNPDGSSTF--EFKIF 153
                  88999..77899999********88899999999****************..7788889****************4456679998887888..88888 PP

                  -S CS
           B3  98 rk 99 
                  +k
  Araip.04CKL 154 EK 155
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1755158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-1557158IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.43460156IPR003340B3 DNA binding domain
CDDcd100173.39E-861153No hitNo description
SMARTSM010196.6E-862156IPR003340B3 DNA binding domain
PfamPF023623.1E-1162155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
FKFLFFAKPH LILLFFLSSF ASSTLKESTF VQIWTIFFSR QIKNFDIHFF DMMNTSAEQS  60
SFFKVFLPQF SSEKLLLPEE HVALTRMKER VPEEFILRNG RGGAWRVKTS CIGEKVCFDD  120
GWKEFVSDNG IQEACVIIVF NPDGSSTFEF KIFEKSMCEK TQTLEEEAAV EMEEHVLYLV  180
LGGNYNDIKE YGEIIATYID QHNPYFVAKM NKSRPNELF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.04CKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025642221.11e-122B3 domain-containing protein REM20
TrEMBLA0A445A8V71e-120A0A445A8V7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.25e-12B3 family protein