PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.0550R

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 330aa MW: 37532.6 Da PI: 9.2274

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.0550R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.5e-55	25	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv ++++++ ++i+evd++++ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ Araip.0550R 25 LPPGFRFHPTDEELISHYLYNKVIDTNFSA-RAIAEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKS 120 79************************99.89***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrapkgek+dWvmhe+rl Araip.0550R 121 LVGMKKTLVFYKGRAPKGEKSDWVMHEFRL 150 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	20	175	IPR003441	NAC domain
PROSITE profile	PS51005	59.243	25	175	IPR003441	NAC domain
Pfam	PF02365	1.6E-28	26	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
RVTLFILGVL TYQMENICSE VEMDLPPGFR FHPTDEELIS HYLYNKVIDT NFSARAIAEV 60 DLNRSEPWDL PWKAKMGEKE WYFFCVRDRK YPTGLRTNRA TEAGYWKATG KDKEIYRGKS 120 LVGMKKTLVF YKGRAPKGEK SDWVMHEFRL HGKFNPHNLP KSAKNEWVIC RVFQKSSAAK 180 KIHLTGIMRL DSSVFLPPLA DSSSSPSNTA TTAPYVPCFS NPIIHNQVGI FDPFSNTPFG 240 ADSFYTSQGM PMQHAQPPSC YTTQDHSILR TLLQNNSSNL RSGFKPAERE MAHHQTSLVD 300 ANNNNNNNGI TSVVAPQDLS SLWNYQVQIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-56	21	181	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-56	21	181	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-56	21	181	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-56	21	181	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-56	21	181	16	174	NAC domain-containing protein 19
3swm_B	9e-56	21	181	16	174	NAC domain-containing protein 19
3swm_C	9e-56	21	181	16	174	NAC domain-containing protein 19
3swm_D	9e-56	21	181	16	174	NAC domain-containing protein 19
3swp_A	9e-56	21	181	16	174	NAC domain-containing protein 19
3swp_B	9e-56	21	181	16	174	NAC domain-containing protein 19
3swp_C	9e-56	21	181	16	174	NAC domain-containing protein 19
3swp_D	9e-56	21	181	16	174	NAC domain-containing protein 19
4dul_A	9e-56	21	181	13	171	NAC domain-containing protein 19
4dul_B	9e-56	21	181	13	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.0550R

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187779.1	0.0	NAC domain-containing protein 100
Refseq	XP_025641313.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-122	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A445AB25	0.0	A0A445AB25_ARAHY; Uncharacterized protein
STRING	GLYMA05G00930.2	1e-144	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-118	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]