PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.06M22
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 409aa    MW: 46317.5 Da    PI: 7.5344
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.06M22genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.41.1e-23123213291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                   Y +YA+ +GF vrk  + +  ++g+  +r+f Cskegkr+e+  +  +++r++ra trtgC+a+l v +++ +++w+v+kl+++HnH+l+p
  Araip.06M22 123 LYVRYARCLGFGVRKGDTARG-KDGTQRRRRFFCSKEGKRAEKYISsLSRKREHRALTRTGCEAMLAVYLDTkTSTWRVKKLVEKHNHDLVP 213
                  7****************9998.77789**************998775789999*****************9999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-21123213IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.644283319IPR007527Zinc finger, SWIM-type
SMARTSM005750.004294321IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSFSENIITL ALYYCPSAAL AYPPRRVEVF HAGDRSSRSP DFLLAFSSFS ASFAQPGPNL  60
GAMDVDSEPL SSQENVEDCM MNGVEENVNC TCDCGGSSSK CVSVTADDII NQTFETSDAA  120
YNLYVRYARC LGFGVRKGDT ARGKDGTQRR RRFFCSKEGK RAEKYISSLS RKREHRALTR  180
TGCEAMLAVY LDTKTSTWRV KKLVEKHNHD LVPKCLTLYG EPVLTTGLEA LELSAANFYT  240
REILGEVKKE IQRVVALDVI NEENISTTVV LKVKECDRRQ HIYNVLYDRN TEHMECECSR  300
WSSEGIPCSH MFCAMKRVGL QKLPDRLLLK RWSKDAKKYL DESSAGGTTQ DREREFLMRY  360
GALSVAATWM VFLGAQDGPS FHDTMNEVWC WTQTLEQKSD LKRQTRDSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.06M22
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016188373.11e-136protein FAR1-RELATED SEQUENCE 5
RefseqXP_016188374.11e-136protein FAR1-RELATED SEQUENCE 5
RefseqXP_020973989.11e-136protein FAR1-RELATED SEQUENCE 5
RefseqXP_025643319.11e-136protein FAR1-RELATED SEQUENCE 5
RefseqXP_025643320.11e-136protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A445EL520.0A0A445EL52_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1797925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-15FAR1 family protein