PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.07HG9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family BBR-BPC
Protein Properties Length: 259aa    MW: 28679.7 Da    PI: 10.0547
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.07HG9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind305.12.4e-931225980301
    GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174
                  k +++ l+ +s+ s++p+g+q+++g k++++ qq +++  ++++d ++ +re++++++lp++  ++ea ++      +r+k+pke+k+ +++kk +k 
  Araip.07HG9  12 KQININLAPDSMPSSCPPGCQISRGIKHMHHPQQqVHHmpNNMGDGSYTAREMHTSDSLPTVPIPSEAGKS------RRGKRPKEPKSVSPNKKASKG 103
                  4556666677888*******************9955669999****************9976655554443......456678888888888888888 PP

    GAGA_bind 175 kkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                  ++kvk++ +d++                             +ka++ks+dl+ln+v++Dest+P+P CsCtG+lrqCYkWGnGGWqSaCCttt+SvyP
  Araip.07HG9 104 TRKVKRDDEDTHkmmfgkanewkssqemingsedlnkqlevTKADWKSQDLALNQVAYDESTMPAPGCSCTGVLRQCYKWGNGGWQSACCTTTLSVYP 201
                  888888887744588999999***************************************************************************** PP

    GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  LP+++++r+aRi+grKmS++af+klL++La+eG+dlsnpvDLkdhWAkHGtn+++ti+
  Araip.07HG9 202 LPAVPNKRHARIGGRKMSGSAFNKLLSRLATEGHDLSNPVDLKDHWAKHGTNRYITIK 259
                  *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.0E-978259IPR010409GAGA-binding transcriptional activator
PfamPF062173.5E-8437259IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MMLGTVKMEG TKQININLAP DSMPSSCPPG CQISRGIKHM HHPQQQVHHM PNNMGDGSYT  60
AREMHTSDSL PTVPIPSEAG KSRRGKRPKE PKSVSPNKKA SKGTRKVKRD DEDTHKMMFG  120
KANEWKSSQE MINGSEDLNK QLEVTKADWK SQDLALNQVA YDESTMPAPG CSCTGVLRQC  180
YKWGNGGWQS ACCTTTLSVY PLPAVPNKRH ARIGGRKMSG SAFNKLLSRL ATEGHDLSNP  240
VDLKDHWAKH GTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.07HG9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204772.10.0protein BASIC PENTACYSTEINE6
RefseqXP_025657721.10.0protein BASIC PENTACYSTEINE6
RefseqXP_025657722.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9994e-92BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A444YGC41e-180A0A444YGC4_ARAHY; Uncharacterized protein
STRINGGLYMA04G02860.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.34e-95basic pentacysteine 6