PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.09JM8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 236aa    MW: 27487.4 Da    PI: 5.263
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.09JM8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.6e-142263344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i++   r+ tf kRr+g+lKK e L +LCd+++++ ifs+ +
  Araip.09JM8 22 IDDMNSRKATFRKRRAGLLKKLEQLAILCDIQACIAIFSPGD 63
                 889999*********************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-201271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.751264IPR002100Transcription factor, MADS-box
CDDcd002661.83E-251395No hitNo description
PRINTSPR004044.2E-101434IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-2014104IPR002100Transcription factor, MADS-box
PfamPF003192.1E-152264IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-103449IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-104970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MATNNNDDDI PKMKRRVKLQ LIDDMNSRKA TFRKRRAGLL KKLEQLAILC DIQACIAIFS  60
PGDKSPTVWP SVEEAKEIVE RFEEIPEPER SSRMVTHPEY RKQKVIWMEK QLEKLKKLND  120
QKEMDIFMHQ IYNEHRPVTD FSDDELDRFL TYVDDKLKAV RNSIIRTHRS KVSISSQPLP  180
APPSAVAVQP LIISGEVDSS VQDELLFNAE QQQKNLEDVV VPNDEPDDDF FWRIVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11335KRRVKLQLIDDMNSRKATFRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.09JM8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016199181.11e-147MADS-box transcription factor PHERES 2-like
RefseqXP_025651891.11e-147MADS-box transcription factor PHERES 2-like
TrEMBLA0A444Z9H41e-168A0A444Z9H4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15602811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.14e-28AGAMOUS-like 86