PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.09KBD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 634aa    MW: 70255 Da    PI: 6.8712
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.09KBDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.8e-17128217291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                   Y+e+A + GF vrk        +g  ++++  C ++g+r++++ +  e+ r++r e+rt+Ckaklk+  +  d++w+v k+  eHnH++ap
  Araip.09KBD 128 AYKEFAWTRGFGVRKGDVGWV--DGVLVRQDIFCHRQGTRSDKHYDrPERVREERLESRTDCKAKLKIYYDVhDNVWRVRKIIDEHNHDMAP 217
                  59**************99988..9*****************9998856778899***************9999***************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-15128217IPR004330FAR1 DNA binding domain
PfamPF044341.1E-4308336IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.594308344IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-5319346IPR006564Zinc finger, PMZ-type
PROSITE profilePS501588.878467482IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MMYNNSTIPS CNFGSDACLI NQKSPIGKGE DPNANSEEEL VSGQMDFDLY SSDNDEESSE  60
MSLGVCGSLS SSEDDDSTSL FGMGTSHSES NKELHRLQGD VHGKVPVLLT AEDFLHIVFT  120
SEEEAYNAYK EFAWTRGFGV RKGDVGWVDG VLVRQDIFCH RQGTRSDKHY DRPERVREER  180
LESRTDCKAK LKIYYDVHDN VWRVRKIIDE HNHDMAPAAF CNLLDRVVKD YRNNEVTAQF  240
YSTYYTPVLS TGLDAIELSA SKLYTRAVFR EVKKQIKGVA TLLFQGRESI NTTIVYSFSK  300
MGRPDRVFKV LYDPNDRKIE CECKMWDSDG IPCSHIFCVM KYEGMEEIPE TLVLRRWCKI  360
AKDCTTLKTG NDSRDQARLL RYSALYLALS HVVTLGCEEV EDFALAHDAI SNLVDILQRR  420
RVEKDGNKVL PNNKCGVKDP TMAATKGAPK RGKANLCASE EEPKLKRRCT KCGVPGHTRR  480
TCAGHDLKAV RVGSEAASSA FAESSFAHVK STERSTSLRR EVPFEEGPKV TSSRSQGGAP  540
LGMTPTQSNV SRFAPSGGGG NIFLGGQRID HFYATPTCGP TSSVPCYSPS FVPGVIHSGS  600
HGASTSLGSE AIERWILENV IGLGSSVEKN GALR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.09KBD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016164992.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445CC210.0A0A445CC21_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1719126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-14FAR1-related sequence 5