PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0CI34
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 164aa    MW: 17450 Da    PI: 5.4627
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0CI34genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70224.48.2e-086785725
       DUF702  7 sCqdCGnqakkdCaheRCR 25
                  CqdCGn+akkdC+++RC 
  Araip.0CI34 67 VCQDCGNRAKKDCSYKRCH 85
                 7*****************5 PP
2DUF70245.62.5e-1483120116153
       DUF702 116 rcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  rc rvs++++ge+e++Y ++v+i GhvfkG+LydqG++
  Araip.0CI34  83 RCHRVSAISNGEDEITYLATVHICGHVFKGFLYDQGAD 120
                  8***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.6E-56785IPR007818Protein of unknown function DUF702
PfamPF051428.2E-1383120IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.8E-1783118IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MPQDNNNNVH HDQQHLLVGT NTTTTTNNSY WNLKMCPEVS EHDGGGGDGN NNGDGGGGSI  60
YGPEFRVCQD CGNRAKKDCS YKRCHRVSAI SNGEDEITYL ATVHICGHVF KGFLYDQGAD  120
GKNDEVPCVS VLQLGNSGKN NNNGECSSPT PIGVPISAYP ASAC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0CI34
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172036.19e-43protein LATERAL ROOT PRIMORDIUM 1 isoform X1
TrEMBLA0A444XZC72e-41A0A444XZC7_ARAHY; Uncharacterized protein
STRINGAET023212e-30(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.45e-15Lateral root primordium (LRP) protein-related